Provides seqan3::views::translate and seqan3::views::translate_single. More...
#include <seqan3/std/concepts>
#include <seqan3/std/ranges>
#include <vector>
#include <stdexcept>
#include <seqan3/alphabet/nucleotide/dna5.hpp>
#include <seqan3/alphabet/aminoacid/aa27.hpp>
#include <seqan3/alphabet/aminoacid/translation.hpp>
#include <seqan3/core/add_enum_bitwise_operators.hpp>
#include <seqan3/core/range/type_traits.hpp>
#include <seqan3/range/container/small_string.hpp>
#include <seqan3/range/detail/random_access_iterator.hpp>
#include <seqan3/range/views/deep.hpp>
#include <seqan3/range/views/detail.hpp>
#include <seqan3/range/container/concept.hpp>
Go to the source code of this file.
Classes | |
struct | seqan3::detail::translate_fn< single > |
Definition of the range adaptor object type for seqan3::views::translate and seqan3::views::translate_single. More... | |
class | seqan3::detail::view_translate< urng_t > |
The return type of seqan3::views::translate. More... | |
class | seqan3::detail::view_translate_single< urng_t > |
The return type of seqan3::views::translate_single. More... | |
Namespaces | |
seqan3 | |
The main SeqAn3 namespace. | |
seqan3::detail | |
The internal SeqAn3 namespace. | |
seqan3::views | |
The SeqAn namespace for views. | |
Enumerations | |
enum class | seqan3::translation_frames : uint8_t { seqan3::FWD_FRAME_0 = 1 , seqan3::FWD_FRAME_1 = 1 << 1 , seqan3::FWD_FRAME_2 = 1 << 2 , seqan3::REV_FRAME_0 = 1 << 3 , seqan3::REV_FRAME_1 = 1 << 4 , seqan3::REV_FRAME_2 = 1 << 5 , seqan3::FWD_REV_0 = FWD_FRAME_0 | REV_FRAME_0 , seqan3::FWD_REV_1 = FWD_FRAME_1 | REV_FRAME_1 , seqan3::FWD_REV_2 = FWD_FRAME_2 | REV_FRAME_2 , seqan3::FWD = FWD_FRAME_0 | FWD_FRAME_1 | FWD_FRAME_2 , seqan3::REV = REV_FRAME_0 | REV_FRAME_1 | REV_FRAME_2 , seqan3::SIX_FRAME = FWD | REV } |
Specialisation values for single and multiple translation frames. More... | |
Functions | |
template<typename urng_t > | |
seqan3::detail::view_translate (urng_t &&, translation_frames const =translation_frames{}) -> view_translate< std::views::all_t< urng_t >> | |
Class template argument deduction for view_translate. | |
template<typename urng_t > | |
seqan3::detail::view_translate_single (urng_t &&) -> view_translate_single< std::views::all_t< urng_t >> | |
Class template argument deduction for view_translate_single with default translation_frames. | |
template<typename urng_t > | |
seqan3::detail::view_translate_single (urng_t &&, translation_frames const) -> view_translate_single< std::views::all_t< urng_t >> | |
Class template argument deduction for view_translate_single. | |
Variables | |
template<> | |
constexpr bool | seqan3::add_enum_bitwise_operators< translation_frames > = true |
Enable bitwise operators for enum translation_frames. More... | |
Alphabet related views | |
constexpr auto | seqan3::views::translate |
A view that translates nucleotide into aminoacid alphabet with 1, 2, 3 or 6 frames. More... | |
constexpr auto | seqan3::views::translate_single |
A view that translates nucleotide into aminoacid alphabet for one of the six frames. More... | |
Provides seqan3::views::translate and seqan3::views::translate_single.